no space left on device

The disk is full — often Docker's own storage rather than your home directory

why

Images, stopped containers, build cache and volumes accumulate on a separate filesystem from your working files, so a full disk here can be invisible from df -h ~. Workflow work directories are the other usual culprit: they keep every intermediate file from every task.

what to do

Check where it is actually full (df -h, then docker system df). Reclaim with docker system prune — but read what it lists before confirming. For workflows, clean old work/ directories once results are published; that is usually where the bulk sits.

filesystem / Docker storage
This is one entry from BioErrors, a catalogue of bioinformatics error messages that point at the wrong thing. Every entry was traced to its real cause before it was written down.
If your error is not in it, paste it there and it gets traced and added.