terminated with an error exit status

The workflow is relaying a tool failure — the reason is in the task's own error file

why

This line is the workflow manager reporting a failure, not describing it. Exit status 1 is a generic \"the program refused\", and a long usage/options dump after it is the tool saying it was called with arguments it could not accept.

what to do

Open the task's working directory — Nextflow prints it as Work dir: right below the error — and read .command.err in full, from the top. The specific reason is usually the first line, before any help text, and it is exactly the part most often cut off when people copy an error out.

Nextflow task failure structure
This is one entry from BioErrors, a catalogue of bioinformatics error messages that point at the wrong thing. Every entry was traced to its real cause before it was written down.
If your error is not in it, paste it there and it gets traced and added.